Publications

Using RNA-seq for genomic scaffold placement, correcting assemblies, and genetic map creation in a common Brassica rapa mapping population

Published in G3, 2017

Recommended citation: RJ Cody Markelz, Michael F Covington, Marcus T Brock, Upendra K Devisetty, Daniel J Kliebenstein, Cynthia Weinig, Julin N Maloof (2017). "Using RNA-seq for genomic scaffold placement, correcting assemblies, and genetic map creation in a common Brassica rapa mapping population" G3. 1(13). http://upendrak.github.io/files/paper13.pdf

Evolinc: a comparative transcriptomics and genomics pipeline for quickly identifying sequence conserved lincRNAs for functional analysis

Published in Frontiers in Genetics, 2017

* These authors contributed equally to this manuscript

Recommended citation: Andrew D. Nelson*, Upendra K. Devisetty*, Kyle Palos, Asher K. Haug-Baltzell, Eric Lyons, Mark A. Beilstein (2017). "Evolinc: a comparative transcriptomics and genomics pipeline for quickly identifying sequence conserved lincRNAs for functional analysis" Frontiers in Genetics. 1(10). http://upendrak.github.io/files/paper10.pdf

Genetic architecture, biochemical underpinnings, and ecological impact of floral UV patterning

Published in Molecular Ecology, 2016

Recommended citation: Marcus T. Brock, Lauren K. Lucas, Nicholas A. Anderson, Matthew J . Rubin, R. J. Cody Markelez, Michael F. Covington, Upendra K. Devisetty, Clint Chappel,‡ Julin N. Maloof and Cynthia Weing (2015). "Genetic architecture, biochemical underpinnings, and ecological impact of floral UV patterning" Molecular Ecology. 1(7). http://upendrak.github.io/files/paper7.pdf

Modeling leaf development enables quantitative trait mapping mapping of novel loci and reveals independent genetic modules for leaf size and shape in Brassica rapa

Published in New Phytology, 2015

Recommended citation: Robert L. Baker, Wen Fung Leong, Marcus T. Brock, Robert C. Markelz, Mike Covington, Upendra K. Devisetty, Julin Maloof, Stephen Welch, and Cynthia Weinig (2015). "Modeling leaf development enables quantitative trait mapping mapping of novel loci and reveals independent genetic modules for leaf size and shape in Brassica rapa" New Phytology. 1(6). http://upendrak.github.io/files/paper6.pdf

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

Published in PNAS, 2013

Recommended citation: Daniel Koenig, José M. Jiménez-Gómez, Seisuke Kimura, Daniel Fulop, Daniel H. Chitwood, Lauren R. Headland, Ravi Kumar, Michael F. Covington, Upendra Kumar Devisetty, An V. Tat, Takayuki Tohge, Anthony Bolger, Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, Guangyan Xiongi, Mallorie Taylor-Teeples, Siobhan M. Bradya,j, Markus Pauly, Detlef Weigel, Björn Usadel, Alisdair R. Fernie, Jie Peng, Neelima R. Sinha, and Julin N. Maloof (2015). "Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato" PNAS. 1(3). http://upendrak.github.io/files/paper3.pdf